Tool Operation

How to preform analysis using the tool.

Once you have the necessary files prepared, you have a few option of how to operate the tool. If you your not sure what this means go over:

pagePreparation

Starting the tool

There are 2 basic ways you can start the tool with. Simple one :

$ docker run -p 5000:5000 solqc/tool

Or with an additional parameter (-v), which will allow you to access local files directly on the server by

$ docker run -p 5000:5000 -v path/to/folder_with_data:/data solqc/tool

If want to analyse big files( > 200MB) is it highly recommended you use the 2nd approach.

Working with the tool:

If you want the tool to preform both variant - read matching and analysis go to :

pageMatching and Analysis

If you already have the matching between the variants and reads you should go to:

pageAnalysis Only