Tool Operation

How to perform analysis using the tool.

Once you have the necessary files prepared, you have a few options of how to operate the tool. If you're not sure what this means go over:

Preparation

Starting the tool

There are 2 basic ways you can start the tool with.

The simple one :

$ docker run -p 5000:5000 solqc/tool

Or the second option:

Using an additional parameter (-v), which will allow you to access local files directly on the server by

$ docker run -p 5000:5000 -v path/to/folder_with_data:/data solqc/tool

If want to analyse large files ( > 500 MB), it is highly recommended you use the 2nd approach.

Working with the tool:

If you want the tool to perform both variant - read matching and analysis go to :

Matching and Analysis

If you already have the matching between the variants and reads you should go to:

Analysis Only